STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwlJN-acetylmuramoyl-L-alanine amidase. (150 aa)    
Predicted Functional Partners:
SFG63955.1
Hypothetical protein.
 
    0.938
ypeB
Germination protein YpeB.
 
  
 0.839
sleB_2
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.718
gerBC_3
Spore germination protein KC.
  
  
 0.654
yaaH_1
Spore germination protein.
 
   
 0.638
SFG18880.1
Hypothetical protein.
  
     0.632
tgl
Protein-glutamine gamma-glutamyltransferase.
  
   
 0.613
gerBB
Spore germination protein KB.
  
  
 0.612
gerAC
Germination protein, Ger(x)C family.
  
  
 0.598
SFG81183.1
Helix-turn-helix domain-containing protein.
  
     0.563
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.