mdtG_1 protein (Clostridium homopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mdtG_1

MFS-type transporter involved in bile tolerance, Atg22 family. (394 aa)

Predicted Functional Partners:

ackA_2

0.591

futA1_2

0.506

futA1_1

0.506

cotA

0.460

luxQ_1

0.454

stp_1

0.434

ilvB_3

0.420

desK

0.414

fdhF_1

0.406

Your Current Organism:

Clostridium homopropionicum

NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ackA_2	ilvB_3	SAMN04488501_11248	SAMN04488501_11246	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	Acetolactate synthase, large subunit.	0.553
ackA_2	mdtG_1	SAMN04488501_11248	SAMN04488501_11247	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.591
cotA	fdhF_1	SAMN04488501_105124	SAMN04488501_103172	Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).	NAD-dependent formate dehydrogenase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.474
cotA	luxQ_1	SAMN04488501_105124	SAMN04488501_12024	Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).	Predicted ATPase.	0.540
cotA	mdtG_1	SAMN04488501_105124	SAMN04488501_11247	Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).	MFS-type transporter involved in bile tolerance, Atg22 family.	0.460
desK	luxQ_1	SAMN04488501_101400	SAMN04488501_12024	Signal transduction histidine kinase.	Predicted ATPase.	0.870
desK	mdtG_1	SAMN04488501_101400	SAMN04488501_11247	Signal transduction histidine kinase.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.414
fdhF_1	cotA	SAMN04488501_103172	SAMN04488501_105124	NAD-dependent formate dehydrogenase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).	0.474
fdhF_1	mdtG_1	SAMN04488501_103172	SAMN04488501_11247	NAD-dependent formate dehydrogenase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.406
futA1_1	mdtG_1	SAMN04488501_103129	SAMN04488501_11247	iron(III) transport system substrate-binding protein.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.506
futA1_2	mdtG_1	SAMN04488501_10163	SAMN04488501_11247	iron(III) transport system substrate-binding protein.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.506
ilvB_3	ackA_2	SAMN04488501_11246	SAMN04488501_11248	Acetolactate synthase, large subunit.	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	0.553
ilvB_3	mdtG_1	SAMN04488501_11246	SAMN04488501_11247	Acetolactate synthase, large subunit.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.420
luxQ_1	cotA	SAMN04488501_12024	SAMN04488501_105124	Predicted ATPase.	Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).	0.540
luxQ_1	desK	SAMN04488501_12024	SAMN04488501_101400	Predicted ATPase.	Signal transduction histidine kinase.	0.870
luxQ_1	mdtG_1	SAMN04488501_12024	SAMN04488501_11247	Predicted ATPase.	MFS-type transporter involved in bile tolerance, Atg22 family.	0.454
mdtG_1	ackA_2	SAMN04488501_11247	SAMN04488501_11248	MFS-type transporter involved in bile tolerance, Atg22 family.	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	0.591
mdtG_1	cotA	SAMN04488501_11247	SAMN04488501_105124	MFS-type transporter involved in bile tolerance, Atg22 family.	Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).	0.460
mdtG_1	desK	SAMN04488501_11247	SAMN04488501_101400	MFS-type transporter involved in bile tolerance, Atg22 family.	Signal transduction histidine kinase.	0.414
mdtG_1	fdhF_1	SAMN04488501_11247	SAMN04488501_103172	MFS-type transporter involved in bile tolerance, Atg22 family.	NAD-dependent formate dehydrogenase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.406