STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG64868.1Protein of unknown function. (136 aa)    
Predicted Functional Partners:
SFG64837.1
HTH domain-containing protein.
 
     0.715
SFG51713.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.513
SFG51647.1
DNA repair photolyase.
  
     0.504
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.487
SFF81576.1
CopG family transcriptional regulator / antitoxin EndoAI.
   
    0.463
purR
Purine operon repressor, PurR.
   
    0.463
ymfD
Predicted arabinose efflux permease, MFS family.
       0.443
marR
DNA-binding transcriptional regulator, MarR family.
       0.443
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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