STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjP_1Pimeloyl-ACP methyl ester carboxylesterase. (274 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.867
carC
Pimeloyl-ACP methyl ester carboxylesterase.
 
  
  0.793
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.745
SFG74259.1
Acyl carrier protein.
   
 0.745
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.745
nifJ_1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.697
SFG69588.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.686
lip1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.685
pdhD
Dihydrolipoamide dehydrogenase.
   
 0.676
pheA
Chorismate mutase.
     
 0.673
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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