STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycG_2Two-component system, OmpR family, sensor histidine kinase VanS. (377 aa)    
Predicted Functional Partners:
walR_2
Two-component system, OmpR family, response regulator VanR.
 0.979
luxQ_1
Predicted ATPase.
 
 
0.961
barA
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
0.959
walR_5
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.856
srrA_1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.847
dacF_2
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
  
 0.832
srrA_2
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.784
yycF_2
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.781
srrA_3
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.778
walR_1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.776
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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