STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG68214.1Tetratricopeptide repeat-containing protein. (432 aa)    
Predicted Functional Partners:
SFG68241.1
Helix-turn-helix domain-containing protein.
 
  
0.919
SFG57208.1
Hypothetical protein.
 
  
 0.887
SFG02449.1
Ribosomal protein S18 acetylase RimI.
 
  
  0.801
cinA_1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.786
SFG68124.1
Uncharacterized membrane protein YkvA, DUF1232 family.
 
     0.783
SFG83858.1
Protein of unknown function.
 
  
 0.770
SFG59795.1
Tetratricopeptide repeat-containing protein.
 
 
 
 0.764
SFF69333.1
Endodeoxyribonuclease RusA.
  
   
 0.760
SFF75959.1
Tetratricopeptide repeat-containing protein.
  
   
 0.756
SFF99521.1
Flagellar FliJ protein.
  
     0.751
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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