STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimO_2Uncharacterized radical SAM protein YgiQ. (677 aa)    
Predicted Functional Partners:
SFG64754.1
Hypothetical protein.
  
 
 0.731
rluF_1
23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family.
       0.501
tmk_1
polyphosphate:AMP phosphotransferase.
   
    0.499
epsH
Glycosyl transferases group 1.
  
 
 0.447
SFG69198.1
Stress responsive A/B Barrel Domain.
       0.447
infC_2
Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.441
SFF88790.1
Methyltransferase domain-containing protein.
 
 
 0.440
ubiA
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
   
 
 0.404
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.