Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ecfA1_2Putative ABC transport system ATP-binding protein. (264 aa)    
Predicted Functional Partners:
lsrC
Putative ABC transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.984
SFG69413.1
Putative ABC transport system substrate-binding protein.
 
    0.966
SFG69492.1
Hypothetical protein.
       0.592
SFG69387.1
HutP protein.
       0.534
ybeZ
PhoH-like ATPase.
   
    0.426
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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