STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuC_7NitT/TauT family transport system permease protein. (247 aa)    
Predicted Functional Partners:
tauB_2
NitT/TauT family transport system ATP-binding protein.
 
 
 0.984
ssuA
NitT/TauT family transport system substrate-binding protein.
 
 
 0.984
ubiA
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
     0.962
tauB_1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 
 0.888
ssuB_2
NitT/TauT family transport system ATP-binding protein.
 
 
 0.881
ssuB_3
NitT/TauT family transport system ATP-binding protein.
 
 
 0.872
SFG86616.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.844
cmpD
NitT/TauT family transport system ATP-binding protein.
 
 
 0.841
SFG76627.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
 
 
 0.820
ubiX
4-hydroxy-3-polyprenylbenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.809
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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