copZ_2 protein (Clostridium homopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

copZ_2

Copper ion binding protein. (71 aa)

Predicted Functional Partners:

sodC

0.906

copA_2

0.892

copA_1

0.808

cadA

0.783

SFG74932.1

0.744

SFG74759.1

0.723

csoR_3

0.703

blaI

0.658

csoR_1

0.512

csoR_2

0.509

Your Current Organism:

Clostridium homopropionicum

NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFG74759.1	copA_2	SAMN04488501_11538	SAMN04488501_11540	Hypothetical protein.	Cu+-exporting ATPase.	0.443
SFG74759.1	copZ_2	SAMN04488501_11538	SAMN04488501_11539	Hypothetical protein.	Copper ion binding protein.	0.723
SFG74932.1	cadA	SAMN04488501_11544	SAMN04488501_102168	Hypothetical protein.	Cd2+/Zn2+-exporting ATPase.	0.744
SFG74932.1	copA_1	SAMN04488501_11544	SAMN04488501_10785	Hypothetical protein.	Cu+-exporting ATPase.	0.744
SFG74932.1	copA_2	SAMN04488501_11544	SAMN04488501_11540	Hypothetical protein.	Cu+-exporting ATPase.	0.744
SFG74932.1	copZ_2	SAMN04488501_11544	SAMN04488501_11539	Hypothetical protein.	Copper ion binding protein.	0.744
SFG74932.1	sodC	SAMN04488501_11544	SAMN04488501_11110	Hypothetical protein.	Superoxide dismutase, Cu-Zn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.400
blaI	cadA	SAMN04488501_110116	SAMN04488501_102168	BlaI family transcriptional regulator, penicillinase repressor.	Cd2+/Zn2+-exporting ATPase.	0.729
blaI	copA_1	SAMN04488501_110116	SAMN04488501_10785	BlaI family transcriptional regulator, penicillinase repressor.	Cu+-exporting ATPase.	0.729
blaI	copA_2	SAMN04488501_110116	SAMN04488501_11540	BlaI family transcriptional regulator, penicillinase repressor.	Cu+-exporting ATPase.	0.729
blaI	copZ_2	SAMN04488501_110116	SAMN04488501_11539	BlaI family transcriptional regulator, penicillinase repressor.	Copper ion binding protein.	0.658
cadA	SFG74932.1	SAMN04488501_102168	SAMN04488501_11544	Cd2+/Zn2+-exporting ATPase.	Hypothetical protein.	0.744
cadA	blaI	SAMN04488501_102168	SAMN04488501_110116	Cd2+/Zn2+-exporting ATPase.	BlaI family transcriptional regulator, penicillinase repressor.	0.729
cadA	copA_1	SAMN04488501_102168	SAMN04488501_10785	Cd2+/Zn2+-exporting ATPase.	Cu+-exporting ATPase.	0.960
cadA	copA_2	SAMN04488501_102168	SAMN04488501_11540	Cd2+/Zn2+-exporting ATPase.	Cu+-exporting ATPase.	0.960
cadA	copZ_2	SAMN04488501_102168	SAMN04488501_11539	Cd2+/Zn2+-exporting ATPase.	Copper ion binding protein.	0.783
cadA	csoR_1	SAMN04488501_102168	SAMN04488501_10787	Cd2+/Zn2+-exporting ATPase.	DNA-binding transcriptional regulator, FrmR family.	0.535
cadA	csoR_2	SAMN04488501_102168	SAMN04488501_10460	Cd2+/Zn2+-exporting ATPase.	DNA-binding transcriptional regulator, FrmR family.	0.535
cadA	csoR_3	SAMN04488501_102168	SAMN04488501_11542	Cd2+/Zn2+-exporting ATPase.	DNA-binding transcriptional regulator, FrmR family.	0.535
cadA	sodC	SAMN04488501_102168	SAMN04488501_11110	Cd2+/Zn2+-exporting ATPase.	Superoxide dismutase, Cu-Zn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.995