STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG75205.1Rubrerythrin. (153 aa)    
Predicted Functional Partners:
SFG78024.1
Hypothetical protein.
   
 
 0.744
thlA
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.518
SFF69965.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.518
mmgA
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.518
fadA_2
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.518
SFG75175.1
Putative copper resistance protein D.
 
     0.511
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.495
SFG10642.1
Hypothetical protein.
  
     0.481
cdr_1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family.
    
 0.426
SFG75149.1
Uncharacterized membrane protein YcaP, DUF421 family.
 
    0.426
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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