STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG81872.1Zn-dependent peptidase ImmA, M78 family. (269 aa)    
Predicted Functional Partners:
SFG81835.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
  
 0.802
SFG81905.1
Hypothetical protein.
  
    0.793
SFG81976.1
Hypothetical protein.
 
     0.779
dnaG_2
DNA primase.
 
    0.732
SFG29249.1
Spore germination protein (amino acid permease).
  
     0.704
SFF87889.1
Hypothetical protein.
  
     0.645
tnsC_2
AAA domain-containing protein.
  
     0.604
tnsB_2
Mu transposase, C-terminal.
 
     0.587
tnsA_2
TnsA endonuclease N terminal.
  
     0.586
SFG82336.1
TniQ protein.
  
     0.543
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.