STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbr1Rubrerythrin. (196 aa)    
Predicted Functional Partners:
hndD_2
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
   
 0.578
fprA1_1
Flavorubredoxin.
 
  
 0.564
hndD_1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
   
 0.560
rd
Rubredoxin.
 
  
 0.545
SFG88661.1
Hypothetical protein.
       0.536
acdA_4
Acyl-CoA dehydrogenase.
 
 
 0.523
fprA1_2
Flavorubredoxin.
 
  
 0.508
SFG88632.1
Hypothetical protein.
       0.503
norV
Flavorubredoxin.
 
  
 0.481
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.