STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG90111.1Protein N-acetyltransferase, RimJ/RimL family. (182 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.871
ydaF_2
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.713
gltB_2
Glutamate synthase (NADH) large subunit.
   
 
 0.705
nifJ_1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.704
pheA
Chorismate mutase.
    
  0.665
SFG90086.1
Predicted acetyltransferase.
      0.620
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
    
 0.510
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.509
argD_3
Acetylornithine aminotransferase apoenzyme.
   
 
 0.506
SFG50248.1
N-carbamoylputrescine amidase.
    
  0.494
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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