STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG90623.1Heme-degrading monooxygenase HmoA. (110 aa)    
Predicted Functional Partners:
SFG90595.1
Hypothetical protein.
       0.547
SFG90570.1
Carboxylesterase.
       0.488
kynB
Kynurenine formamidase.
    
  0.487
lcfB
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     
 0.486
cotA
Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
     
 0.479
SFG84046.1
Lipase (class 2).
     
 0.476
SFG90475.1
Hypothetical protein.
 
     0.465
SFG90531.1
RmlD substrate binding domain-containing protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.429
SFG90510.1
CHAP domain-containing protein.
     
 0.413
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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