STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompRResponse regulator receiver domain-containing protein. (284 aa)    
Predicted Functional Partners:
barA
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.994
luxQ_1
Predicted ATPase.
  
 0.989
gmr_3
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.981
gmr_2
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.964
cdpA
Diguanylate cyclase/phosphodiesterase.
 
 0.949
cph2_2
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.933
SFG61418.1
Signal transduction histidine kinase.
 
 0.931
SFF89853.1
PAS domain S-box-containing protein.
 
 0.919
pleC
PAS domain S-box-containing protein.
  
 0.907
tmoS_3
PAS domain S-box-containing protein.
  
 0.907
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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