Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFF90245.1 | SFG91312.1 | SAMN04488501_103118 | SAMN04488501_1237 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | SEC-C motif-containing protein. | 0.885 |
| SFF90245.1 | ctc | SAMN04488501_103118 | SAMN04488501_1115 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.928 |
| SFF90245.1 | rplJ | SAMN04488501_103118 | SAMN04488501_1326 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.816 |
| SFF90245.1 | rplW | SAMN04488501_103118 | SAMN04488501_1025 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.765 |
| SFF90245.1 | rpmC | SAMN04488501_103118 | SAMN04488501_10211 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.766 |
| SFF90245.1 | secE | SAMN04488501_103118 | SAMN04488501_1321 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.996 |
| SFF90245.1 | secY | SAMN04488501_103118 | SAMN04488501_10223 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.991 |
| SFG59029.1 | SFG91312.1 | SAMN04488501_11166 | SAMN04488501_1237 | Protein of unknown function. | SEC-C motif-containing protein. | 0.687 |
| SFG91312.1 | SFF90245.1 | SAMN04488501_1237 | SAMN04488501_103118 | SEC-C motif-containing protein. | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.885 |
| SFG91312.1 | SFG59029.1 | SAMN04488501_1237 | SAMN04488501_11166 | SEC-C motif-containing protein. | Protein of unknown function. | 0.687 |
| SFG91312.1 | SFG91336.1 | SAMN04488501_1237 | SAMN04488501_1238 | SEC-C motif-containing protein. | Sporulation and spore germination. | 0.701 |
| SFG91312.1 | ctc | SAMN04488501_1237 | SAMN04488501_1115 | SEC-C motif-containing protein. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.716 |
| SFG91312.1 | phoB | SAMN04488501_1237 | SAMN04488501_102169 | SEC-C motif-containing protein. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.753 |
| SFG91312.1 | rplJ | SAMN04488501_1237 | SAMN04488501_1326 | SEC-C motif-containing protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.705 |
| SFG91312.1 | rplW | SAMN04488501_1237 | SAMN04488501_1025 | SEC-C motif-containing protein. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.742 |
| SFG91312.1 | rpmC | SAMN04488501_1237 | SAMN04488501_10211 | SEC-C motif-containing protein. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.738 |
| SFG91312.1 | secE | SAMN04488501_1237 | SAMN04488501_1321 | SEC-C motif-containing protein. | Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.875 |
| SFG91312.1 | secY | SAMN04488501_1237 | SAMN04488501_10223 | SEC-C motif-containing protein. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.888 |
| SFG91336.1 | SFG91312.1 | SAMN04488501_1238 | SAMN04488501_1237 | Sporulation and spore germination. | SEC-C motif-containing protein. | 0.701 |
| ctc | SFF90245.1 | SAMN04488501_1115 | SAMN04488501_103118 | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.928 |
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