STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG92605.1EAL and modified HD-GYP domain-containing signal transduction protein. (401 aa)    
Predicted Functional Partners:
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.709
cph2_7
Diguanylate cyclase/phosphodiesterase.
 
   
 0.658
flhB_1
Flagellar biosynthetic protein FliR/FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
     0.540
gmr_3
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.530
cdpA
Diguanylate cyclase/phosphodiesterase.
 
   
 0.527
gmr_2
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.508
cph2_2
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.498
cph2_8
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.475
cph2_6
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.468
gmr_1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.462
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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