STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG92977.1Protein of unknown function. (79 aa)    
Predicted Functional Partners:
lhgO_1
L-2-hydroxyglutarate oxidase LhgO.
 
    0.953
lhgO_2
Glycerol-3-phosphate dehydrogenase.
 
    0.791
trxB_4
Thioredoxin reductase.
 
    0.778
trxB_3
Thioredoxin reductase.
 
    0.772
SFG93025.1
Hypothetical protein.
       0.691
niaR
Hypothetical protein.
       0.659
SFG93069.1
HDIG domain-containing protein.
       0.640
pyrK_1
NAD(P)H-flavin reductase.
   
    0.584
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.584
SFG68214.1
Tetratricopeptide repeat-containing protein.
  
    0.565
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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