STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG93564.1Transcriptional regulator, contains XRE-family HTH domain. (131 aa)    
Predicted Functional Partners:
cinA_1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.666
SFG54437.1
Hypothetical protein.
    
 
 0.647
nadE_2
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.567
SFG93540.1
Type III restriction enzyme, res subunit.
       0.487
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.481
nifJ_1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.475
nreC
Two component transcriptional regulator, LuxR family.
  
 0.413
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.