Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFH00257.1 | SFH00285.1 | SAMN04488501_13314 | SAMN04488501_13315 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SFH00257.1 | barA | SAMN04488501_13314 | SAMN04488501_103233 | Hypothetical protein. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.887 |
SFH00257.1 | cinA_1 | SAMN04488501_13314 | SAMN04488501_12315 | Hypothetical protein. | Competence/damage-inducible protein cinA; Belongs to the CinA family. | 0.651 |
SFH00257.1 | cph2_2 | SAMN04488501_13314 | SAMN04488501_10598 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.638 |
SFH00257.1 | guaA | SAMN04488501_13314 | SAMN04488501_101295 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.643 |
SFH00257.1 | guaB | SAMN04488501_13314 | SAMN04488501_101294 | Hypothetical protein. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.651 |
SFH00257.1 | luxQ_1 | SAMN04488501_13314 | SAMN04488501_12024 | Hypothetical protein. | Predicted ATPase. | 0.904 |
SFH00257.1 | scpA | SAMN04488501_13314 | SAMN04488501_104208 | Hypothetical protein. | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.760 |
SFH00257.1 | smc_1 | SAMN04488501_13314 | SAMN04488501_13313 | Hypothetical protein. | Hypothetical protein. | 0.686 |
SFH00257.1 | tmoS_2 | SAMN04488501_13314 | SAMN04488501_106142 | Hypothetical protein. | Predicted ATPase. | 0.744 |
SFH00285.1 | SFH00257.1 | SAMN04488501_13315 | SAMN04488501_13314 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SFH00285.1 | barA | SAMN04488501_13315 | SAMN04488501_103233 | Hypothetical protein. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.887 |
SFH00285.1 | cinA_1 | SAMN04488501_13315 | SAMN04488501_12315 | Hypothetical protein. | Competence/damage-inducible protein cinA; Belongs to the CinA family. | 0.651 |
SFH00285.1 | cph2_2 | SAMN04488501_13315 | SAMN04488501_10598 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.638 |
SFH00285.1 | guaA | SAMN04488501_13315 | SAMN04488501_101295 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.643 |
SFH00285.1 | guaB | SAMN04488501_13315 | SAMN04488501_101294 | Hypothetical protein. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.651 |
SFH00285.1 | luxQ_1 | SAMN04488501_13315 | SAMN04488501_12024 | Hypothetical protein. | Predicted ATPase. | 0.904 |
SFH00285.1 | scpA | SAMN04488501_13315 | SAMN04488501_104208 | Hypothetical protein. | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.760 |
SFH00285.1 | smc_1 | SAMN04488501_13315 | SAMN04488501_13313 | Hypothetical protein. | Hypothetical protein. | 0.686 |
SFH00285.1 | tmoS_2 | SAMN04488501_13315 | SAMN04488501_106142 | Hypothetical protein. | Predicted ATPase. | 0.744 |
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