STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerACSpore germination protein A3 precursor. (355 aa)    
Predicted Functional Partners:
yndE
Spore germination protein YndE.
 
  
 0.975
gerBA
Spore germination protein B1.
 
  
 0.973
KXL54058.1
Stage II sporulation protein R; spore_II_R.
 
     0.861
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.708
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.705
KXL54481.1
YabP family protein.
  
     0.703
KXL54482.1
Putative stage IV sporulation protein YqfD.
  
     0.699
spoIIE
Stage II sporulation protein E.
  
     0.687
KXL53045.1
Stage III sporulation protein AC/AD protein family protein.
  
     0.660
spoIVB
SpoIVB peptidase precursor.
  
     0.613
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.