lldR_1 protein (Anaerotignum neopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lldR_1

Putative L-lactate dehydrogenase operon regulatory protein. (242 aa)

Predicted Functional Partners:

lldR_2

0.760

mcbR_2

0.751

mcbR_1

0.749

mcbR_3

0.748

KXL54027.1

0.742

KXL53010.1

0.735

capA

0.558

accD

0.492

argS

0.443

dagK

0.418

Your Current Organism:

Anaerotignum neopropionicum

NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXL53010.1	lldR_1	CLNEO_15520	CLNEO_02400	DNA-binding transcriptional regulator CsiR.	Putative L-lactate dehydrogenase operon regulatory protein.	0.735
KXL54027.1	lldR_1	CLNEO_01230	CLNEO_02400	DNA-binding transcriptional regulator CsiR.	Putative L-lactate dehydrogenase operon regulatory protein.	0.742
accD	lldR_1	CLNEO_27450	CLNEO_02400	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	Putative L-lactate dehydrogenase operon regulatory protein.	0.492
argS	dagK	CLNEO_02390	CLNEO_02380	arginine--tRNA ligase.	Diacylglycerol kinase.	0.783
argS	lldR_1	CLNEO_02390	CLNEO_02400	arginine--tRNA ligase.	Putative L-lactate dehydrogenase operon regulatory protein.	0.443
capA	lldR_1	CLNEO_02410	CLNEO_02400	Capsule biosynthesis protein CapA.	Putative L-lactate dehydrogenase operon regulatory protein.	0.558
dagK	argS	CLNEO_02380	CLNEO_02390	Diacylglycerol kinase.	arginine--tRNA ligase.	0.783
dagK	lldR_1	CLNEO_02380	CLNEO_02400	Diacylglycerol kinase.	Putative L-lactate dehydrogenase operon regulatory protein.	0.418
lldR_1	KXL53010.1	CLNEO_02400	CLNEO_15520	Putative L-lactate dehydrogenase operon regulatory protein.	DNA-binding transcriptional regulator CsiR.	0.735
lldR_1	KXL54027.1	CLNEO_02400	CLNEO_01230	Putative L-lactate dehydrogenase operon regulatory protein.	DNA-binding transcriptional regulator CsiR.	0.742
lldR_1	accD	CLNEO_02400	CLNEO_27450	Putative L-lactate dehydrogenase operon regulatory protein.	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	0.492
lldR_1	argS	CLNEO_02400	CLNEO_02390	Putative L-lactate dehydrogenase operon regulatory protein.	arginine--tRNA ligase.	0.443
lldR_1	capA	CLNEO_02400	CLNEO_02410	Putative L-lactate dehydrogenase operon regulatory protein.	Capsule biosynthesis protein CapA.	0.558
lldR_1	dagK	CLNEO_02400	CLNEO_02380	Putative L-lactate dehydrogenase operon regulatory protein.	Diacylglycerol kinase.	0.418
lldR_1	lldR_2	CLNEO_02400	CLNEO_23970	Putative L-lactate dehydrogenase operon regulatory protein.	Putative L-lactate dehydrogenase operon regulatory protein.	0.760
lldR_1	mcbR_1	CLNEO_02400	CLNEO_17990	Putative L-lactate dehydrogenase operon regulatory protein.	HTH-type transcriptional regulator McbR.	0.749
lldR_1	mcbR_2	CLNEO_02400	CLNEO_19310	Putative L-lactate dehydrogenase operon regulatory protein.	HTH-type transcriptional regulator McbR.	0.751
lldR_1	mcbR_3	CLNEO_02400	CLNEO_24560	Putative L-lactate dehydrogenase operon regulatory protein.	HTH-type transcriptional regulator McbR.	0.748
lldR_2	lldR_1	CLNEO_23970	CLNEO_02400	Putative L-lactate dehydrogenase operon regulatory protein.	Putative L-lactate dehydrogenase operon regulatory protein.	0.760
lldR_2	mcbR_1	CLNEO_23970	CLNEO_17990	Putative L-lactate dehydrogenase operon regulatory protein.	HTH-type transcriptional regulator McbR.	0.775