Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mtrR_1HTH-type transcriptional regulator MtrR. (203 aa)    
Predicted Functional Partners:
msbA
Lipid A export ATP-binding/permease protein MsbA.
  
     0.698
KXL52218.1
Putative ABC transporter ATP-binding protein.
  
     0.665
ubiE_1
Demethylmenaquinone methyltransferase.
 
 
   0.642
irtA_1
Iron import ATP-binding/permease protein IrtA.
  
     0.621
KXL53638.1
Putative ABC transporter ATP-binding protein.
  
     0.596
ycgJ_1
Putative methyltransferase YcgJ.
 
 
   0.545
irtA_2
Iron import ATP-binding/permease protein IrtA.
  
     0.535
zupT_1
Zinc transporter ZupT.
       0.533
KXL54133.1
Leucine carboxyl methyltransferase.
  
     0.497
KXL52736.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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