Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiE_1Demethylmenaquinone methyltransferase. (204 aa)    
Predicted Functional Partners:
ycgJ_1
Putative methyltransferase YcgJ.
 
    
0.712
zupT_1
Zinc transporter ZupT.
       0.709
mtrR_1
HTH-type transcriptional regulator MtrR.
 
 
   0.642
KXL53054.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 0.609
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.595
ubiE_4
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
  
     0.539
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN precursor; Belongs to the 5'-nucleotidase family.
    
 0.525
srfAA
Surfactin synthase subunit 1.
    
 0.493
KXL52507.1
Bacterial regulatory protein, tetR family.
  
 
   0.476
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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