STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuBA_1Choline transport ATP-binding protein OpuBA. (375 aa)    
Predicted Functional Partners:
opuBC_1
Choline-binding protein precursor.
 0.989
opuCB_2
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 0.989
opuCB_1
Carnitine transport permease protein OpuCB.
 0.984
opuBC_2
Choline-binding protein precursor.
 0.964
opuCB_4
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 0.954
opuCB_3
Carnitine transport permease protein OpuCB.
 0.935
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
      0.831
KXL54239.1
Potassium transporter peripheral membrane component.
 
     0.651
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
      0.620
modB
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.565
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.