STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrR_1Transcriptional regulator LsrR. (303 aa)    
Predicted Functional Partners:
lsrK_1
Autoinducer 2 kinase LsrK.
 
  
 0.880
KXL54246.1
Hypothetical protein.
 
     0.866
lsrB_1
Autoinducer 2-binding protein LsrB precursor.
 
  
 0.772
lsrB_2
Autoinducer 2-binding protein LsrB precursor.
 
  
 0.772
lsrK_2
Autoinducer 2 kinase LsrK.
 
  
 0.743
KXL54371.1
Hypothetical protein.
 
     0.731
lsrF_1
Putative aldolase LsrF.
 
  
 0.564
lsrF_2
Putative aldolase LsrF.
 
  
 0.564
lsrD_1
Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.
 
    0.481
lsrD_2
Autoinducer 2 import system permease protein LsrD.
 
    0.481
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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