Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXL54341.1Tripartite ATP-independent periplasmic transporter, DctQ component. (178 aa)    
Predicted Functional Partners:
siaT_4
Sialic acid TRAP transporter permease protein SiaT.
 
  0.952
dctP_2
C4-dicarboxylate-binding periplasmic protein precursor.
 
    0.925
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
  
    0.808
KXL54340.1
Serine dehydratase alpha chain.
 
  0.807
siaT_3
Sialic acid TRAP transporter permease protein SiaT.
  
  0.799
KXL54343.1
Hypothetical protein.
       0.628
KXL54215.1
Serine dehydratase alpha chain.
  
  0.526
KXL53171.1
Hypothetical protein; Conserved region in glutamate synthase.
  
     0.499
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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