Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXL53557.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
ygbT
CRISPR-associated endonuclease Cas1.
   
 
 0.838
rlmCD_1
23S rRNA (uracil-C(5))-methyltransferase RlmCD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.778
KXL53556.1
Hypothetical protein.
       0.658
yhaM
3'-5' exoribonuclease YhaM.
       0.639
KXL53969.1
PEGA domain protein.
  
     0.424
KXL52446.1
HlyD family secretion protein.
  
     0.412
KXL53554.1
Hypothetical protein; Copper amine oxidase N-terminal domain.
       0.407
KXL51969.1
Outer membrane lipoprotein carrier protein LolA.
  
     0.406
KXL52572.1
Hypothetical protein.
  
     0.402
KXL52649.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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