Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXL53567.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
KXL53569.1
Hypothetical protein.
       0.735
dpnM_1
Modification methylase DpnIIA.
       0.729
KXL53570.1
Hypothetical protein.
       0.681
KXL53571.1
Hypothetical protein.
       0.551
ancA_1
Cellulosome-anchoring protein precursor.
       0.517
KXL53573.1
Hypothetical protein.
       0.497
KXL53574.1
Type IV leader peptidase family protein.
       0.495
KXL53564.1
Antirestriction protein (ArdA).
       0.445
KXL53565.1
Hypothetical protein.
       0.445
KXL53566.1
Hypothetical protein.
       0.445
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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