Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXL53577.1Type IV secretion system protein VirB11. (517 aa)    
Predicted Functional Partners:
KXL53578.1
Hypothetical protein.
 
  
  0.970
KXL53579.1
Hypothetical protein.
 
  
  0.970
KXL53575.1
SAF domain protein.
 
     0.948
srp54
Signal recognition particle 54 kDa protein.
 
     0.948
KXL53580.1
Hypothetical protein.
 
     0.943
KXL53574.1
Type IV leader peptidase family protein.
 
   
 0.892
KXL53804.1
Hypothetical protein.
 
  
  0.876
KXL53805.1
Hypothetical protein.
 
  
  0.876
KXL53583.1
Hypothetical protein.
 
     0.858
KXL53801.1
SAF domain protein.
 
     0.781
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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