STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoDPutative HMP/thiamine import ATP-binding protein YkoD. (492 aa)    
Predicted Functional Partners:
ecfT
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.986
KXL53635.1
Hypothetical protein.
  
 0.981
KXL53633.1
Hypothetical protein.
 
    0.885
irtA_2
Iron import ATP-binding/permease protein IrtA.
  
 
0.873
irtA_1
Iron import ATP-binding/permease protein IrtA.
 
  
 
0.862
KXL53638.1
Putative ABC transporter ATP-binding protein.
 
  
 
0.860
soxS
Regulatory protein SoxS.
 
     0.785
mntR_1
Transcriptional regulator MntR.
       0.699
appA
Oligopeptide-binding protein AppA precursor.
 
 
 0.685
KXL52160.1
DNA-binding transcriptional repressor AcrR.
  
     0.639
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.