STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXL53641.1RNA polymerase sigma factor. (150 aa)    
Predicted Functional Partners:
KXL53643.1
Hypothetical protein.
 
     0.928
mobA_1
Mobilization protein A.
 
     0.843
KXL53642.1
Hypothetical protein.
 
    
0.841
dnaC_1
DNA replication protein DnaC.
  
    0.735
KXL53630.1
Recombinase.
  
     0.703
KXL53631.1
Hypothetical protein.
  
    0.702
KXL53647.1
Hypothetical protein; N-terminal phage replisome organiser (Phage_rep_org_N).
  
    0.653
KXL53640.1
Sigma-70, region 4.
       0.627
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.575
rsiW
anti-sigma-W factor RsiW.
  
 
 0.570
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.