Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXL53667.1Hypothetical protein. (65 aa)    
Predicted Functional Partners:
KXL53668.1
Hypothetical protein; Resolvase, N terminal domain.
       0.773
KXL53669.1
Hypothetical protein.
       0.450
KXL53666.1
Virulence-associated protein E.
       0.441
dnaG_3
DNA primase.
       0.425
KXL53670.1
Hypothetical protein.
       0.415
KXL53671.1
Hypothetical protein.
       0.415
KXL53672.1
PrgI family protein.
       0.415
KXL53673.1
AAA-like domain protein.
       0.415
iap_1
Putative endopeptidase p60 precursor.
       0.415
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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