Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cph2_2 | guaA | CLNEO_12750 | CLNEO_22060 | Phytochrome-like protein cph2. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.841 |
| cph2_2 | typA | CLNEO_12750 | CLNEO_12740 | Phytochrome-like protein cph2. | GTP-binding protein TypA/BipA. | 0.683 |
| der | guaA | CLNEO_26920 | CLNEO_22060 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.669 |
| der | rplA | CLNEO_26920 | CLNEO_26480 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.564 |
| der | typA | CLNEO_26920 | CLNEO_12740 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein TypA/BipA. | 0.743 |
| guaA | cph2_2 | CLNEO_22060 | CLNEO_12750 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Phytochrome-like protein cph2. | 0.841 |
| guaA | der | CLNEO_22060 | CLNEO_26920 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.669 |
| guaA | infC | CLNEO_22060 | CLNEO_12330 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.494 |
| guaA | rplA | CLNEO_22060 | CLNEO_26480 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.972 |
| guaA | rplD | CLNEO_22060 | CLNEO_22370 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.537 |
| guaA | rpoB | CLNEO_22060 | CLNEO_20320 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.942 |
| guaA | rpsB | CLNEO_22060 | CLNEO_11590 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.796 |
| guaA | rpsI | CLNEO_22060 | CLNEO_22740 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.690 |
| guaA | typA | CLNEO_22060 | CLNEO_12740 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | GTP-binding protein TypA/BipA. | 0.810 |
| infC | guaA | CLNEO_12330 | CLNEO_22060 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.494 |
| infC | rplA | CLNEO_12330 | CLNEO_26480 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.973 |
| infC | rplD | CLNEO_12330 | CLNEO_22370 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.970 |
| infC | rpoB | CLNEO_12330 | CLNEO_20320 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.762 |
| infC | rpsB | CLNEO_12330 | CLNEO_11590 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.986 |
| infC | rpsI | CLNEO_12330 | CLNEO_22740 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.951 |
page 1 of 4