STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yegEPutative diguanylate cyclase YegE. (862 aa)    
Predicted Functional Partners:
cph2_2
Phytochrome-like protein cph2.
 
 0.999
cph2_3
Phytochrome-like protein cph2.
 0.999
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 0.999
barA
Signal transduction histidine-protein kinase BarA.
 
 0.999
cph2_4
Phytochrome-like protein cph2.
 0.999
cheV
Chemotaxis protein CheV.
  
 0.998
ycdT
Putative diguanylate cyclase YcdT.
 
0.998
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 0.998
rpfG_2
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
0.996
cph2_1
Phytochrome-like protein cph2.
 0.996
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.