STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedQPutative diguanylate cyclase YedQ. (561 aa)    
Predicted Functional Partners:
cph2_2
Phytochrome-like protein cph2.
 
 
 0.960
cph2_4
Phytochrome-like protein cph2.
 
 0.935
barA
Signal transduction histidine-protein kinase BarA.
 
 
 0.917
cph2_3
Phytochrome-like protein cph2.
 
 
 0.911
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 
 0.875
rpfG_2
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
0.855
yegE
Putative diguanylate cyclase YegE.
 
0.855
adrA
Putative diguanylate cyclase AdrA.
  
 
  0.830
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
  0.816
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
  0.794
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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