Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXL52503.1DNA-binding transcriptional repressor AcrR. (197 aa)    
Predicted Functional Partners:
msbA
Lipid A export ATP-binding/permease protein MsbA.
  
     0.759
KXL52218.1
Putative ABC transporter ATP-binding protein.
  
     0.753
irtA_1
Iron import ATP-binding/permease protein IrtA.
  
     0.744
KXL53638.1
Putative ABC transporter ATP-binding protein.
  
     0.744
irtA_2
Iron import ATP-binding/permease protein IrtA.
  
     0.744
KXL52505.1
Putative multidrug export ATP-binding/permease protein.
  
     0.703
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
  
     0.629
KXL53633.1
Hypothetical protein.
 
     0.591
KXL53656.1
Hypothetical protein.
  
     0.491
soxS
Regulatory protein SoxS.
  
     0.417
Your Current Organism:
Anaerotignum neopropionicum
NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4
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