yfmC_2 protein (Anaerotignum neopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yfmC_2

Fe(3+)-citrate-binding protein YfmC precursor. (332 aa)

Predicted Functional Partners:

yusV_2

0.966

yfhA

0.963

KXL52199.1

0.937

feuC

0.936

yfiZ

0.935

yusV_1

0.922

KXL52200.1

0.835

KXL51762.1

0.796

ubiE_4

0.773

yfmC_3

0.673

Your Current Organism:

Anaerotignum neopropionicum

NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXL51762.1	ubiE_4	CLNEO_28290	CLNEO_28300	Hypothetical protein.	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.	0.862
KXL51762.1	yfmC_2	CLNEO_28290	CLNEO_28310	Hypothetical protein.	Fe(3+)-citrate-binding protein YfmC precursor.	0.796
KXL51762.1	yfmC_3	CLNEO_28290	CLNEO_28320	Hypothetical protein.	Fe(3+)-citrate-binding protein YfmC precursor.	0.752
KXL51762.1	yusV_2	CLNEO_28290	CLNEO_28280	Hypothetical protein.	Putative siderophore transport system ATP-binding protein YusV.	0.637
KXL52199.1	KXL52200.1	CLNEO_23640	CLNEO_23650	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative ABC transporter ATP-binding protein.	0.994
KXL52199.1	yfiZ	CLNEO_23640	CLNEO_23890	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.443
KXL52199.1	yfmC_2	CLNEO_23640	CLNEO_28310	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Fe(3+)-citrate-binding protein YfmC precursor.	0.937
KXL52199.1	yfmC_3	CLNEO_23640	CLNEO_28320	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Fe(3+)-citrate-binding protein YfmC precursor.	0.933
KXL52199.1	yusV_1	CLNEO_23640	CLNEO_23910	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative siderophore transport system ATP-binding protein YusV.	0.973
KXL52199.1	yusV_2	CLNEO_23640	CLNEO_28280	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative siderophore transport system ATP-binding protein YusV.	0.979
KXL52200.1	KXL52199.1	CLNEO_23650	CLNEO_23640	Putative ABC transporter ATP-binding protein.	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.994
KXL52200.1	feuC	CLNEO_23650	CLNEO_23900	Putative ABC transporter ATP-binding protein.	Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.949
KXL52200.1	yfhA	CLNEO_23650	CLNEO_28330	Putative ABC transporter ATP-binding protein.	Putative siderophore transport system permease protein YfhA; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.944
KXL52200.1	yfiZ	CLNEO_23650	CLNEO_23890	Putative ABC transporter ATP-binding protein.	Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.947
KXL52200.1	yfmC_2	CLNEO_23650	CLNEO_28310	Putative ABC transporter ATP-binding protein.	Fe(3+)-citrate-binding protein YfmC precursor.	0.835
KXL52200.1	yfmC_3	CLNEO_23650	CLNEO_28320	Putative ABC transporter ATP-binding protein.	Fe(3+)-citrate-binding protein YfmC precursor.	0.832
feuC	KXL52200.1	CLNEO_23900	CLNEO_23650	Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative ABC transporter ATP-binding protein.	0.949
feuC	yfiZ	CLNEO_23900	CLNEO_23890	Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.919
feuC	yfmC_2	CLNEO_23900	CLNEO_28310	Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Fe(3+)-citrate-binding protein YfmC precursor.	0.936
feuC	yfmC_3	CLNEO_23900	CLNEO_28320	Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Fe(3+)-citrate-binding protein YfmC precursor.	0.934