KXL51677.1 protein (Anaerotignum neopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXL51677.1

Positive regulator of sigma(E), RseC/MucC. (142 aa)

Predicted Functional Partners:

rsxB_1

0.682

rnfC

0.491

rsxG

0.471

KXL51676.1

0.428

rsxD

0.427

norG

0.427

Your Current Organism:

Anaerotignum neopropionicum

NCBI taxonomy Id: 36847
Other names: A. neopropionicum, Clostridium neopropionicum, DSM 3847, KCTC 15564, strain X4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXL51676.1	KXL51677.1	CLNEO_29620	CLNEO_29630	Putative redox-active protein; C_GCAxxG_C_C.	Positive regulator of sigma(E), RseC/MucC.	0.428
KXL51677.1	KXL51676.1	CLNEO_29630	CLNEO_29620	Positive regulator of sigma(E), RseC/MucC.	Putative redox-active protein; C_GCAxxG_C_C.	0.428
KXL51677.1	norG	CLNEO_29630	CLNEO_29640	Positive regulator of sigma(E), RseC/MucC.	HTH-type transcriptional regulator NorG.	0.427
KXL51677.1	rnfC	CLNEO_29630	CLNEO_01350	Positive regulator of sigma(E), RseC/MucC.	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.491
KXL51677.1	rsxB_1	CLNEO_29630	CLNEO_01400	Positive regulator of sigma(E), RseC/MucC.	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.682
KXL51677.1	rsxD	CLNEO_29630	CLNEO_01360	Positive regulator of sigma(E), RseC/MucC.	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.427
KXL51677.1	rsxG	CLNEO_29630	CLNEO_01370	Positive regulator of sigma(E), RseC/MucC.	Electron transport complex subunit RsxG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.471
norG	KXL51677.1	CLNEO_29640	CLNEO_29630	HTH-type transcriptional regulator NorG.	Positive regulator of sigma(E), RseC/MucC.	0.427
rnfC	KXL51677.1	CLNEO_01350	CLNEO_29630	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Positive regulator of sigma(E), RseC/MucC.	0.491
rnfC	rsxB_1	CLNEO_01350	CLNEO_01400	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.999
rnfC	rsxD	CLNEO_01350	CLNEO_01360	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.999
rnfC	rsxG	CLNEO_01350	CLNEO_01370	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Electron transport complex subunit RsxG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.999
rsxB_1	KXL51677.1	CLNEO_01400	CLNEO_29630	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Positive regulator of sigma(E), RseC/MucC.	0.682
rsxB_1	rnfC	CLNEO_01400	CLNEO_01350	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.999
rsxB_1	rsxD	CLNEO_01400	CLNEO_01360	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.999
rsxB_1	rsxG	CLNEO_01400	CLNEO_01370	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex subunit RsxG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.999
rsxD	KXL51677.1	CLNEO_01360	CLNEO_29630	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	Positive regulator of sigma(E), RseC/MucC.	0.427
rsxD	rnfC	CLNEO_01360	CLNEO_01350	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	Electron transport complex subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.999
rsxD	rsxB_1	CLNEO_01360	CLNEO_01400	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.999
rsxD	rsxG	CLNEO_01360	CLNEO_01370	Electron transport complex subunit RsxD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	Electron transport complex subunit RsxG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.999