STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaaH_1Spore germination protein YaaH. (471 aa)    
Predicted Functional Partners:
pgdA_3
peptidoglycan-N-acetylglucosamine deacetylase.
 
    
 0.628
gerBC_1
Spore germination protein B3 precursor.
  
     0.589
yndE_1
Spore germination protein YndE.
  
     0.511
gerBC_2
Spore germination protein B3 precursor.
  
     0.456
nagZ
Beta-hexosaminidase precursor.
  
  
 0.450
yndE_3
Spore germination protein YndE.
  
     0.437
sleB_3
Spore cortex-lytic enzyme precursor.
  
   
 0.432
gerBA_1
Spore germination protein B1.
  
     0.431
sleB_2
Spore cortex-lytic enzyme precursor.
  
   
 0.425
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.