STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdPutative cysteine desulfurase. (385 aa)    
Predicted Functional Partners:
sufU
Zinc-dependent sulfurtransferase SufU.
 0.927
sufC
Vegetative protein 296.
  
 0.887
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
 0.884
sufB_2
FeS cluster assembly protein SufB.
 
 0.883
KPU43481.1
Dinitrogenase iron-molybdenum cofactor.
  
 0.881
sufB_1
FeS cluster assembly protein SufB.
 
 0.881
KPU46267.1
Hypothetical protein.
  
 0.864
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
  
 0.788
trxB_2
Thioredoxin reductase.
 
 
 0.767
trxB_1
Thioredoxin reductase.
  
 
 0.724
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.