Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
KPU46133.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.848
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.837
KPU44330.1
Hypothetical protein.
  
 
 0.777
KPU46134.1
Hypothetical protein.
       0.757
KPU46135.1
Aminoalkylphosphonic acid N-acetyltransferase.
       0.757
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
  0.755
rnfB_3
Electron transport complex subunit RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.748
ndhI_2
NAD(P)H-quinone oxidoreductase subunit I, chloroplastic.
  
 0.733
hndC_3
NADP-reducing hydrogenase subunit HndC.
  
 
 0.685
sfrB
NADPH-Fe(3+) oxidoreductase subunit beta.
    
 0.641
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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