STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU46133.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.939
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.933
KPU44330.1
Hypothetical protein.
  
 0.815
cdr
Coenzyme A disulfide reductase.
  
 
  0.788
KPU44547.1
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
 
  0.788
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
  0.773
ndhI_2
NAD(P)H-quinone oxidoreductase subunit I, chloroplastic.
  
  0.770
rnfB_3
Electron transport complex subunit RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
  0.758
KPU46134.1
Hypothetical protein.
       0.757
KPU46135.1
Aminoalkylphosphonic acid N-acetyltransferase.
       0.757
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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