STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macB_1Macrolide export ATP-binding/permease protein MacB. (462 aa)    
Predicted Functional Partners:
mdtA_1
Multidrug resistance protein MdtA.
 
 
 0.980
lacG
Lactose transport system permease protein LacG.
 
    0.944
yesO
Putative ABC transporter substrate-binding protein YesO.
 
    0.940
lacF
Lactose transport system permease protein LacF.
 
    0.871
rplGA
Putative ribosomal protein YlxQ.
   
    0.782
KPU45976.1
Hypothetical protein.
  
     0.674
urdA_6
Urocanate reductase precursor.
  
    0.669
ytrE
ABC transporter ATP-binding protein YtrE.
 
 0.649
czcB
Cobalt-zinc-cadmium resistance protein CzcB.
 
  
 0.636
yknX
Putative efflux system component YknX.
 
 
 0.630
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.