STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugCTrehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (369 aa)    
Predicted Functional Partners:
lacF
Lactose transport system permease protein LacF.
 
 0.999
lacG
Lactose transport system permease protein LacG.
 0.998
yesO
Putative ABC transporter substrate-binding protein YesO.
 
 0.989
msmE
Multiple sugar-binding protein precursor.
 
 0.989
KPU44437.1
Fluoroquinolones export ATP-binding proteinc.
 
   
 
0.903
yxlF_2
Putative ABC transporter ATP-binding protein YxlF.
 
  
 
0.890
drrA_4
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
   
 
0.888
drrA_5
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
   
 
0.879
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
0.801
modB
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  0.715
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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