STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coxMCarbon monoxide dehydrogenase medium chain. (265 aa)    
Predicted Functional Partners:
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
 
 0.999
ndhS
Nicotinate dehydrogenase small FeS subunit.
 
 0.999
pucA
Putative xanthine dehydrogenase subunit A.
 
 
 0.971
mocA
Molybdenum cofactor cytidylyltransferase.
 
 
 0.915
KPU42756.1
Hypothetical protein.
 
 
 0.914
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
 0.890
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
  0.784
KPU43044.1
Hypothetical protein.
 
   
 0.777
rnfB_3
Electron transport complex subunit RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.741
mtaD
5-methylthioadenosine/S-adenosylhomocysteine deaminase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
  
 
 0.663
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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