STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU45857.1YbaK / prolyl-tRNA synthetases associated domain protein. (148 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
    
   0.895
KPU45856.1
Hypothetical protein.
       0.737
ybaK_2
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.
  
     0.720
ybaK_1
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.
  
     0.649
ytkD
Putative 8-oxo-dGTP diphosphatase YtkD; Belongs to the Nudix hydrolase family.
       0.570
KPU43309.1
Hypothetical protein.
  
     0.502
KPU43313.1
Hypothetical protein.
  
     0.478
KPU43311.1
Von Willebrand factor type A domain protein.
  
     0.454
cheR2
Chemotaxis protein methyltransferase cher2.
    
   0.424
fliE
Flagellar hook-basal body complex protein FliE.
    
   0.424
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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