STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiE_1Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE. (269 aa)    
Predicted Functional Partners:
slyA_2
Transcriptional regulator SlyA.
 
     0.890
ywnH_1
Putative phosphinothricin acetyltransferase YwnH.
       0.777
gcvT
Aminomethyltransferase.
    
 0.697
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
    
 0.586
hndC_3
NADP-reducing hydrogenase subunit HndC.
    
 0.584
sdpR_1
Transcriptional repressor SdpR.
     
 0.540
KPU45864.1
Sodium bile acid symporter family protein.
     
 0.523
ubiE_4
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
  
     0.501
tam
Trans-aconitate 2-methyltransferase.
 
  
0.473
puuB
Gamma-glutamylputrescine oxidoreductase.
   
 0.470
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.