STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywnH_1Putative phosphinothricin acetyltransferase YwnH. (164 aa)    
Predicted Functional Partners:
ubiE_1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
       0.777
slyA_2
Transcriptional regulator SlyA.
  
    0.755
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.754
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.754
gcvT
Aminomethyltransferase.
    
 0.740
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.689
doeB
N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase.
  
  
 0.522
hisE
phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
    
  0.515
tpa
Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.512
KPU45864.1
Sodium bile acid symporter family protein.
  
    0.506
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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