STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPU45976.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
capC
Capsule biosynthesis protein CapC.
 
   
 0.904
capB
Capsule biosynthesis protein CapB.
 
   
 0.890
phoR_2
Alkaline phosphatase synthesis sensor protein PhoR.
 
     0.732
macB_1
Macrolide export ATP-binding/permease protein MacB.
  
     0.674
KPU45977.1
Hypothetical protein.
       0.578
ubiG_1
Ubiquinone biosynthesis O-methyltransferase.
  
     0.542
urdA_6
Urocanate reductase precursor.
  
     0.513
KPU42765.1
ABC-2 type transporter.
  
     0.490
KPU42928.1
Hypothetical protein.
  
     0.483
torS
Sensor protein TorS.
  
     0.475
Your Current Organism:
Oxobacter pfennigii
NCBI taxonomy Id: 36849
Other names: ATCC 43583, Clostridium pfennigii, DSM 3222, O. pfennigii, strain V5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.